STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_288Phage tail tube family protein. (122 aa)    
Predicted Functional Partners:
CH53_289
Phage tail sheath family protein.
 
  
 0.972
CH53_285
DNA circularization family protein.
 
    0.878
CH53_283
Bacteriophage Mu Gp45 family protein.
 
    0.877
CH53_282
Phage GP46 family protein.
 
    0.875
CH53_284
Phage late control protein; Gene D family.
 
    0.873
CH53_281
Baseplate J-like family protein.
 
    0.870
CH53_280
Hypothetical protein.
 
    0.868
CH53_287
Mu-like prophage FluMu gp41 family protein.
  
    0.849
CH53_290
Hypothetical protein.
  
    0.620
CH53_291
Putative bacteriophage ATP-binding protein.
  
    0.612
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.