STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
acrRHTH-type transcriptional regulator AcrR. (218 aa)    
Predicted Functional Partners:
ychN
Protein ychN.
       0.759
CH53_2893
Hypothetical protein.
       0.681
acrA
Acriflavine resistance protein A; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.672
kefA_2
Mechanosensitive ion channel family protein.
       0.573
tolC_1
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
     
 0.561
acrB
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
     
 0.515
aaeX
Hypothetical protein.
  
   
 0.456
elaB_1
Hypothetical protein.
  
     0.453
rpmJ-2
rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
       0.420
CH53_3619
Hypothetical protein.
  
     0.400
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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