STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2908Glycosyltransferase like 2 family protein. (296 aa)    
Predicted Functional Partners:
CH53_2909
Glycosyl transferases group 1 family protein.
 
  
 0.885
CH53_2907
Glycosyltransferase like 2 family protein.
 
    
0.838
CH53_2906
Polysaccharide biosynthesis family protein.
 
  
 0.833
hyaD
Glycosyltransferase like 2 family protein.
  
     0.763
CH53_2910
Glycosyl transferases group 1 family protein.
 
  
 0.678
CH53_2912
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.572
galE
galE: UDP-glucose 4-epimerase GalE.
 
  
 0.544
CH53_2913
Glycosyl transferases group 1 family protein.
 
  
 0.448
galE-2
galE: UDP-glucose 4-epimerase GalE; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.446
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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