STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2910Glycosyl transferases group 1 family protein. (342 aa)    
Predicted Functional Partners:
CH53_2913
Glycosyl transferases group 1 family protein.
 
     0.725
CH53_2906
Polysaccharide biosynthesis family protein.
  
  
 0.700
CH53_2908
Glycosyltransferase like 2 family protein.
 
 
 0.680
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.673
CH53_2909
Glycosyl transferases group 1 family protein.
 
    
0.653
CH53_2907
Glycosyltransferase like 2 family protein.
 
 
 0.650
CH53_2912
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.591
tuaD
NDP-sugDHase: nucleotide sugar dehydrogenase family protein.
 
  
 0.576
CH53_2911
Glycosyl transferase 4 family protein.
  
  
 0.555
rfbB
dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.443
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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