STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_2920Utp13 specific WD40 associated domain protein. (269 aa)    
Predicted Functional Partners:
ybaK
cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
    
 0.775
CH53_1113
Bacterial virulence factor hemolysin family protein.
  
     0.707
cpxP
Periplasmic protein CpxP.
  
     0.698
rffT
wzyE family protein; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.693
wzzE
Lipopolysaccharide biosynthesis protein wzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.667
CH53_3150
cyd_oper_ybgE: cyd operon protein YbgE.
  
     0.651
CH53_2858
Hypothetical protein.
  
     0.644
wecF
4-alpha-L-fucosyltransferase glycosyl transferase group 56 family protein; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.625
bhsA_1
Hypothetical protein.
  
     0.617
ydgH_1
Hypothetical protein.
  
     0.595
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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