STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tesAGDSL-like Lipase/Acylhydrolase family protein. (190 aa)    
Predicted Functional Partners:
CH53_2929
ftsX-like permease family protein.
 
 
   0.971
ybbA
ABC transporter family protein.
 
 
   0.941
ybbO_1
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.675
birA
Bifunctional protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.541
tesB
tesB: acyl-CoA thioesterase II.
      
 0.509
CH53_1183
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
   
 
 0.483
CH53_1229
Hypothetical protein; Bacterial shufflon, N-terminal constant region family protein.
   
 
 0.483
rcsA_1
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
   
 
 0.483
fhaB
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
   
 
 0.483
CH53_3832
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
   
 
 0.483
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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