STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
melAAlpha-galactosidase. (449 aa)    
Predicted Functional Partners:
lacZ_1
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.915
scrB
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
     
 0.904
bfrA
Glycosyl hydrolases 43 family protein.
     
 0.904
sacA
Sucrose-6-phosphate hydrolase family protein; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
     
 0.904
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
   
 
 0.904
malZ
Hypothetical protein; Alpha amylase, N-terminal ig-like domain protein.
     
 0.903
yicI
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
     
 0.900
chb
Chitobiase.
     
  0.900
galM
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
     
  0.900
melR
Melibiose operon regulatory protein.
 
   
 0.758
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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