STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
melRMelibiose operon regulatory protein. (308 aa)    
Predicted Functional Partners:
melA
Alpha-galactosidase.
 
   
 0.758
araC
Helix-turn-helix domain protein.
  
   
 0.571
melB
Melibiose carrier protein.
 
   
 0.549
int_1
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.499
ybbY
Putative purine permease ybbY.
  
    0.497
CH53_1122
Hypothetical protein.
  
     0.437
rhaR_2
Helix-turn-helix domain protein.
  
     0.430
bglH
Cryptic outer membrane porin BglH.
  
     0.425
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
  
 
0.420
CH53_247
Putative enterotoxin.
 
     0.416
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.