STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ampHPutative enzyme. (380 aa)    
Predicted Functional Partners:
bssS
bssS family protein.
  
     0.641
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.618
CH53_3759
Hypothetical protein.
  
     0.546
rstB
HAMP domain protein.
  
    0.517
yfeE
yniB-like family protein.
  
     0.507
sgrR_1
Bacterial extracellular solute-binding s, 5 Middle family protein; Activates the small RNA gene sgrS under glucose-phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding these molecules in its C-terminal solute-binding domain.
  
     0.488
hha
Hemolysin expression-modulating protein.
  
     0.478
holE-2
DNA polymerase III subunit theta.
  
     0.459
CH53_638
sseB C-terminal domain protein.
  
     0.453
CH53_1382
Hypothetical protein.
 
  
 0.438
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.