STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpe-2Rpe: ribulose-phosphate 3-epimerase. (228 aa)    
Predicted Functional Partners:
rpiB
rpiB: ribose 5-phosphate isomerase B.
 
 
 0.960
tktB
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 0.928
fbp
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family.
  
 
 0.926
scrK_1
pfkB carbohydrate kinase family protein; Belongs to the carbohydrate kinase PfkB family.
  
 0.925
scrK_2
pfkB carbohydrate kinase family protein.
  
 0.925
glpX
glpX: fructose-1,6-bisphosphatase, class II.
    
 0.923
manA
manA: mannose-6-phosphate isomerase, class I; Belongs to the mannose-6-phosphate isomerase type 1 family.
    
 0.922
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
     
 0.917
srlD
Sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.913
pfkB-2
6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
     
 0.910
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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