Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mlc_2marR family protein. (406 aa)    
Predicted Functional Partners:
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
 
 0.908
nagA-2
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.827
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
   
 0.787
bglK
Beta-glucoside kinase.
  
     0.765
arbF_2
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein.
  
 
 0.758
murP
Phosphotransferase system, EIIC family protein.
  
 
 0.705
treP
PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component.
  
 
 0.705
malX_2
pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component domain protein.
  
 
 0.705
aglA
PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component domain protein.
  
 
 0.705
bglF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
  
 
 0.705
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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