STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mamAMethylaspartate mutase, S subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate). (148 aa)    
Predicted Functional Partners:
mutE
Methylaspartate mutase, E subunit; Catalyzes the carbon skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate ((2S,3S)-3-methylaspartate).
 
  0.998
CH53_313
B_methylAsp_ase: methylaspartate ammonia-lyase.
 
  
  0.994
mutL_2
glmL_fam: conserved hypothetical family protein.
 
     0.953
CH53_314
Hypothetical protein.
 
   
 0.950
CH53_315
Hypothetical protein.
 
   
 0.947
scpA
Hypothetical protein; acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain protein.
  
 
 0.860
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.824
glnA
glnA: glutamine synthetase, type I.
     
 0.805
gltD_2
gltD_gamma_fam: glutamate synthase, small subunit domain protein.
     
  0.800
gltB
Glutamine amidotransferases class-II family protein.
     
  0.800
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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