STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3100Outer membrane porin, OprD family protein. (467 aa)    
Predicted Functional Partners:
chb
Chitobiase.
 
   
 0.723
CH53_3703
Hypothetical protein.
  
   
 0.711
yaeP
Hypothetical protein.
  
     0.649
CH53_3101
ybfN-like lipofamily protein.
     
 0.644
dmsC2
DMSO reductase anchor subunit family protein.
  
     0.641
aat_1
Hypothetical protein.
 
      0.615
dmsC1
DMSO reductase anchor subunit family protein.
  
     0.602
eae
Bacterial Ig-like domain family protein.
  
     0.575
CH53_2976
Antirestriction family protein.
  
     0.559
CH53_2322
Invasin.
  
     0.553
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.