STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chbChitobiase. (891 aa)    
Predicted Functional Partners:
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
  
 0.987
arbF_2
PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component family protein.
  
  
 0.985
lacZ_1
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
  
 0.930
ybbD
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein.
    
 0.919
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.919
aglA
PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component domain protein.
 
    0.910
ptsG
PTS system glucose-specific EIICB component.
 
    0.910
malX_2
pts-Glc: PTS system, maltose and glucose-specific subfamily, IIC component domain protein.
 
    0.909
melA
Alpha-galactosidase.
     
  0.900
murP
Phosphotransferase system, EIIC family protein.
  
    0.896
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.