STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3113Cytotoxic family protein. (243 aa)    
Predicted Functional Partners:
prcA
Proconvertase P-domain protein.
  
  
 0.776
CH53_3114
Immunity 26 family protein.
       0.773
dcrB
Protein dcrB.
  
 
 0.754
CH53_2535
Hypothetical protein.
  
 
 0.754
fkpA_2
Domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein.
  
 
 0.752
CH53_2003
Nitronate monooxygenase family protein.
   
    0.480
CH53_2002
Hypothetical protein; Belongs to the UPF0261 family.
   
    0.467
CH53_2558
impE family protein.
  
  
 0.441
CH53_1433
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
  
  
 0.412
psaB
type_VI_ompA: type VI secretion system peptidoglycan-associated domain.
  
    0.401
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.