Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3113Cytotoxic family protein. (243 aa)    
Predicted Functional Partners:
CH53_3114
Immunity 26 family protein.
       0.773
prcA
Proconvertase P-domain protein.
  
  
 0.724
bcsC
Tetratricopeptide repeat family protein.
   
 
 0.555
CH53_2003
Nitronate monooxygenase family protein.
   
    0.515
CH53_2002
Hypothetical protein; Belongs to the UPF0261 family.
   
    0.498
trxA
Thioredoxin: thioredoxin; Belongs to the thioredoxin family.
    
   0.486
trxA-2
Thioredoxin: thioredoxin.
    
   0.486
ybbN
Putative thioredoxin protein.
    
   0.486
CH53_1433
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family.
  
  
 0.463
ctpF
ATPase_P-type: HAD ATPase, P-type, IC family protein.
   
  
 0.441
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.