Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CH53_1171 | phr | CH53_1171 | CH53_3128 | Hypothetical protein. | FAD binding domain of DNA photolyase family protein. | 0.843 |
CH53_1171 | ycgE | CH53_1171 | CH53_2486 | Hypothetical protein. | merR regulatory family protein. | 0.514 |
CH53_2489 | phr | CH53_2489 | CH53_3128 | FAD dependent oxidoreductase family protein. | FAD binding domain of DNA photolyase family protein. | 0.649 |
CH53_2489 | ycgE | CH53_2489 | CH53_2486 | FAD dependent oxidoreductase family protein. | merR regulatory family protein. | 0.817 |
CH53_3127 | CH53_3129 | CH53_3127 | CH53_3129 | Hypothetical protein. | cAMP phosphodiesterases class-II family protein. | 0.732 |
CH53_3127 | phr | CH53_3127 | CH53_3128 | Hypothetical protein. | FAD binding domain of DNA photolyase family protein. | 0.901 |
CH53_3127 | ybgI | CH53_3127 | CH53_3130 | Hypothetical protein. | NIF3 family protein. | 0.645 |
CH53_3129 | CH53_3127 | CH53_3129 | CH53_3127 | cAMP phosphodiesterases class-II family protein. | Hypothetical protein. | 0.732 |
CH53_3129 | phr | CH53_3129 | CH53_3128 | cAMP phosphodiesterases class-II family protein. | FAD binding domain of DNA photolyase family protein. | 0.741 |
CH53_3129 | ybgI | CH53_3129 | CH53_3130 | cAMP phosphodiesterases class-II family protein. | NIF3 family protein. | 0.685 |
def | phr | CH53_1454 | CH53_3128 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | FAD binding domain of DNA photolyase family protein. | 0.652 |
def | thrA | CH53_1454 | CH53_1086 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Asp_kinase: aspartate kinase domain protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.621 |
infB | phr | CH53_1279 | CH53_3128 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | FAD binding domain of DNA photolyase family protein. | 0.625 |
infB | thrA | CH53_1279 | CH53_1086 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Asp_kinase: aspartate kinase domain protein; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.463 |
infB | ybeY | CH53_1279 | CH53_3080 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Putative rRNA maturation factor YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.732 |
phr | CH53_1171 | CH53_3128 | CH53_1171 | FAD binding domain of DNA photolyase family protein. | Hypothetical protein. | 0.843 |
phr | CH53_2489 | CH53_3128 | CH53_2489 | FAD binding domain of DNA photolyase family protein. | FAD dependent oxidoreductase family protein. | 0.649 |
phr | CH53_3127 | CH53_3128 | CH53_3127 | FAD binding domain of DNA photolyase family protein. | Hypothetical protein. | 0.901 |
phr | CH53_3129 | CH53_3128 | CH53_3129 | FAD binding domain of DNA photolyase family protein. | cAMP phosphodiesterases class-II family protein. | 0.741 |
phr | def | CH53_3128 | CH53_1454 | FAD binding domain of DNA photolyase family protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.652 |
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