STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhRInner membrane transport permease ybhR. (368 aa)    
Predicted Functional Partners:
ccmA-8
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
 0.988
macA_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.938
ybhS
ABC-2 type transporter family protein.
 
  
 
0.839
acnR
Bacterial regulatory s, tetR family protein.
 
  
 0.707
ydjA
Putative NAD(P)H nitroreductase ydjA.
  
  
 0.633
yadG
ABC transporter family protein.
 
  
 0.591
lptB
LPS_export_lptB: LPS export ABC transporter ATP-binding protein.
   
  0.577
livG
ABC transporter family protein.
 
      0.532
CH53_159
ycaO-type kinase domain protein.
  
  
 0.526
CH53_3174
CAAX protease self-immunity family protein.
   
  
 0.475
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.