STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3230ABC transporter, phosphonate, periplasmic substrate-binding family protein. (276 aa)    
Predicted Functional Partners:
CH53_3225
Fatty acid desaturase family protein.
 
     0.849
yehW
Binding--dependent transport system inner membrane component family protein.
       0.680
phnJ
Protein phnJ; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family.
  
  
 0.668
phnH
phnH_redo: phosphonate C-P lyase system protein PhnH.
  
  
 0.631
blaSE
Trypsin family protein; Belongs to the peptidase S1B family.
  
    0.562
phnI
Bacterial phosphonate metabolism family protein.
  
  
 0.538
phnL
CP_lyasePhnL: phosphonate C-P lyase system protein PhnL.
  
  
 0.537
phnG
phnG_redo: phosphonate C-P lyase system protein PhnG.
  
  
 0.520
phnK
CP_lyasePhnK: phosphonate C-P lyase system protein PhnK.
  
  
 0.513
yehY
Binding--dependent transport system inner membrane component family protein.
       0.472
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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