Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ccmA-9 | rplC | CH53_3252 | CH53_1488 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.678 |
| ccmA-9 | rplD | CH53_3252 | CH53_1487 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.698 |
| ccmA-9 | rplM | CH53_3252 | CH53_2263 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.680 |
| ccmA-9 | rplP | CH53_3252 | CH53_1481 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.665 |
| ccmA-9 | rplT | CH53_3252 | CH53_4144 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.674 |
| ccmA-9 | rplU | CH53_3252 | CH53_1297 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.682 |
| ccmA-9 | rpmA | CH53_3252 | CH53_1296 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.667 |
| ccmA-9 | rpsC | CH53_3252 | CH53_1482 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.679 |
| ccmA-9 | rpsG | CH53_3252 | CH53_1494 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.694 |
| ccmA-9 | rpsO | CH53_3252 | CH53_1276 | ccmA: heme ABC exporter, ATP-binding protein CcmA. | S15_bact: ribosomal protein S15. | 0.679 |
| rplC | ccmA-9 | CH53_1488 | CH53_3252 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | ccmA: heme ABC exporter, ATP-binding protein CcmA. | 0.678 |
| rplC | rplD | CH53_1488 | CH53_1487 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.998 |
| rplC | rplM | CH53_1488 | CH53_2263 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| rplC | rplP | CH53_1488 | CH53_1481 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
| rplC | rplT | CH53_1488 | CH53_4144 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.990 |
| rplC | rplU | CH53_1488 | CH53_1297 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.987 |
| rplC | rpmA | CH53_1488 | CH53_1296 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.993 |
| rplC | rpsC | CH53_1488 | CH53_1482 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
| rplC | rpsG | CH53_1488 | CH53_1494 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.993 |
| rplC | rpsO | CH53_1488 | CH53_1276 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | S15_bact: ribosomal protein S15. | 0.993 |
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