STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3266Major Facilitator Superfamily protein. (383 aa)    
Predicted Functional Partners:
CH53_2001
Bacterial regulatory s, tetR family protein.
  
     0.675
folE
folE: GTP cyclohydrolase I.
     
 0.584
yebZ
Inner membrane protein YebZ.
  
     0.579
CH53_1710
Hypothetical protein.
  
     0.557
gltR
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
    0.535
secM
Secretion monitor family protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.529
echA8
enoyl-CoA hydratase/isomerase family protein.
  
   0.521
CH53_651
Hypothetical protein.
  
     0.481
CH53_3211
Suppressor of fused family protein.
  
     0.476
CH53_650
High-affinity nickel-transport family protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.465
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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