Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pehX_2Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family. (430 aa)    
Predicted Functional Partners:
yesR
Glycosyl Hydrolase Family 88 family protein.
 
   
 0.856
pemA
Pectinesterase A.
 
   
 0.794
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.780
uxaC
Glucuronate isomerase family protein.
 
   
 0.686
uxaB
Mannitol dehydrogenase Rossmann domain protein.
 
     0.652
melB1_2
Major Facilitator Superfamily protein.
 
    0.652
uxaA_1
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
   
 0.622
CH53_4175
Hypothetical protein.
  
 
 0.583
bcsZ
Glycosyl hydrolases 8 family protein.
      
 0.509
garD
Galactarate dehydratase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
   
 0.480
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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