STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3297LVIVD repeat family protein. (411 aa)    
Predicted Functional Partners:
CH53_3298
Periplasmic binding domain protein.
 
     0.862
CH53_3423
impA-related N-terminal family protein.
  
     0.592
CH53_3635
Bacterial regulatory s, gntR family protein.
  
     0.552
oprF_2
ompA family protein.
  
     0.542
CH53_1178
Bacterial regulatory s, tetR family protein.
  
     0.541
aRA11
Putative 2,5-didehydrogluconate reductase.
  
     0.475
CH53_3410
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
  
     0.448
CH53_3417
vgr_GE: Rhs element Vgr family protein.
  
     0.442
efe
2OG-Fe(II) oxygenase superfamily protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.421
mdtH_2
Major Facilitator Superfamily protein.
       0.420
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.