STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3308Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein. (457 aa)    
Predicted Functional Partners:
CH53_3307
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
 
 0.997
glgC_4
Nucleotidyl transferase family protein.
  
 
 0.947
manA
manA: mannose-6-phosphate isomerase, class I; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.936
manX
PTS system mannose-specific EIIAB component.
    
 0.913
manY
EII-Sor: PTS system, mannose/fructose/sorbose, IIC component family protein.
     
  0.900
manZ_3
EIID-AGA: PTS system, mannose/fructose/sorbose, IID component family protein.
    
  0.900
CH53_3320
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.841
gmd
Gmd: GDP-mannose 4,6-dehydratase.
 
  
 0.822
CH53_3314
Nucleotidyl transferase family protein.
 
  
 0.812
CH53_3317
Nucleotidyl transferase family protein.
 
  
 0.811
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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