STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
melB1_2Major Facilitator Superfamily protein. (527 aa)    
Predicted Functional Partners:
yesR
Glycosyl Hydrolase Family 88 family protein.
 
    0.806
pehX_2
Glycosyl hydrolases 28 family protein; Belongs to the glycosyl hydrolase 28 family.
 
    0.652
CH53_4197
phage_O_Nterm: phage replication protein O, N-terminal domain.
  
     0.534
CH53_3753
ribose/Galactose Isomerase family protein.
  
     0.522
yicI
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.492
cytR_2
Bacterial regulatory s, lacI family protein.
  
     0.487
CH53_2492
Hypothetical protein.
 
 
 0.467
CH53_2425
Isochorismatase family protein.
 
    0.430
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.