STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3311Glycosyl transferases group 1 family protein. (449 aa)    
Predicted Functional Partners:
CH53_3309
ABC-2 type transporter family protein.
 
  
 0.899
CH53_3310
ABC transporter family protein.
 
 
 
 0.887
CH53_3314
Nucleotidyl transferase family protein.
 
  
 0.871
CH53_3322
Glycosyl transferases group 1 family protein.
 
     0.860
CH53_3307
GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
 
  
 0.854
CH53_3320
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.848
CH53_3317
Nucleotidyl transferase family protein.
  
  
 0.843
gmd
Gmd: GDP-mannose 4,6-dehydratase.
 
  
 0.822
CH53_3308
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
 
  
 0.811
CH53_3313
fkbM_fam: methyltransferase, FkbM family domain protein.
  
    0.775
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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