STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3314Nucleotidyl transferase family protein. (251 aa)    
Predicted Functional Partners:
CH53_3315
Hypothetical protein.
 
     0.954
CH53_3316
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
 
    0.907
CH53_3311
Glycosyl transferases group 1 family protein.
 
  
 0.879
CH53_3317
Nucleotidyl transferase family protein.
 
    
0.859
CH53_3322
Glycosyl transferases group 1 family protein.
 
  
 0.832
CH53_3321
Glycosyl transferases group 1 family protein.
 
  
 0.823
CH53_3320
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.815
CH53_3308
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
 
  
 0.812
CH53_3309
ABC-2 type transporter family protein.
 
   
 0.812
CH53_3312
Hypothetical protein.
       0.804
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.