STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgrD3-beta hydroxysteroid dehydrogenase/isomerase family protein. (369 aa)    
Predicted Functional Partners:
CH53_3011
mcrBC 5-methylcytosine restriction system component family protein.
  
     0.624
CH53_1831
Hypothetical protein.
  
     0.611
kpsD
Polysialic acid transport protein kpsD.
  
   
 0.579
yhjQ
cellulose_yhjQ: cellulose synthase operon protein YhjQ.
  
     0.547
CH53_4215
Putative exodeoxyribonuclease VIII.
  
     0.535
CH53_539
Putative kpsE.
  
     0.509
bcsA_2
Cellulose synthase family protein.
 
 
   0.508
bfrA
Glycosyl hydrolases 43 family protein.
  
     0.501
aas
Acyltransferase family protein; Plays a role in lysophospholipid acylation. Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3- phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1; In the C-terminal section; belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.497
tauD
Alpha-ketoglutarate-dependent taurine dioxygenase.
  
  
 0.483
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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