STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsrD_1Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family. (327 aa)    
Predicted Functional Partners:
ccmA-10
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
 
 0.927
lsrB_2
Periplasmic binding domain protein.
 
 
 0.875
rbsC_4
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
    
0.839
mglB_1
Periplasmic binding domain protein.
 
 
 0.836
rbsB_2
Periplasmic binding domain protein.
 
 
 0.835
ccmA-7
ccmA: heme ABC exporter, ATP-binding protein CcmA.
 
 
 0.834
alsB
D-allose-binding periplasmic protein.
 
 
 0.829
rbsB_1
Periplasmic binding domain protein.
 
 
 0.818
ccmA-15
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
   0.818
lsrB_1
Periplasmic binding domain protein.
  
 
 0.791
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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