STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduX_1GHMP kinase N terminal domain protein. (286 aa)    
Predicted Functional Partners:
cobD_1
L_thr_O3P_dcar: threonine-phosphate decarboxylase.
 
 
 0.989
pduX_2
GHMP kinase N terminal domain protein.
  
  
 
0.902
cbiG
Cobalamin synthesis G family protein.
 
  
 0.866
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.769
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
  
 0.750
cobK
Precor6x_red: precorrin-6x reductase.
 
  
 0.673
cobI
cobI_cbiL: precorrin-2 C(20)-methyltransferase; Belongs to the precorrin methyltransferase family.
 
    0.642
rnfC_1
rnfC: electron transport complex, RnfABCDGE type, C subunit.
 
     0.635
CH53_3986
Putative heat shock DnaJ domain protein.
  
     0.605
pocR
Helix-turn-helix domain protein.
  
     0.581
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.