STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
pduUPropanediol utilization protein PduU. (116 aa)    
Predicted Functional Partners:
eutP-2
eutP: ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family.
 
  
 0.959
pduT
Microcompartments protein.
 
  
 0.954
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
   
 0.887
pduN_1
Ethanolamine utilization EutN/carboxysome family protein.
 
   
 0.879
pduK
BMC domain protein.
 
  
 0.877
rnfC_1
rnfC: electron transport complex, RnfABCDGE type, C subunit.
 
    0.871
pduA
Propanediol utilization protein PduA.
 
  
 0.848
pduL
Propanediol utilization PduL family protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
   
 0.845
eutP
eutP: ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family.
 
  
 0.840
pduP_1
Aldehyde dehydrogenase family protein.
 
  
 0.835
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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