Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rnfC_1rnfC: electron transport complex, RnfABCDGE type, C subunit. (463 aa)    
Predicted Functional Partners:
gltB
Glutamine amidotransferases class-II family protein.
  
 
 0.999
pduT
Microcompartments protein.
 
     0.935
pduU
Propanediol utilization protein PduU.
 
    0.871
eutP-2
eutP: ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family.
 
     0.863
pduP_1
Aldehyde dehydrogenase family protein.
 
 
 0.833
pduN_1
Ethanolamine utilization EutN/carboxysome family protein.
 
     0.817
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
     0.810
nuoE
NADH-quinone oxidoreductase subunit E.
 
 
 0.783
pduQ_1
Iron-containing alcohol dehydrogenase family protein.
     
 0.774
ackA-2
ackA: acetate kinase.
     
 0.768
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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