STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pduQ_1Iron-containing alcohol dehydrogenase family protein. (371 aa)    
Predicted Functional Partners:
pduP_1
Aldehyde dehydrogenase family protein.
 0.997
pduP_2
Aldehyde dehydrogenase family protein.
 
 0.952
pduE
Propanediol dehydratase small subunit.
  
 
 0.929
pduD
Propanediol dehydratase medium subunit.
  
 
 0.929
pduC
Propanediol dehydratase large subunit.
  
 
 0.929
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
 0.829
eutP-2
eutP: ethanolamine utilization protein, EutP; Belongs to the EutP/PduV family.
  
  
 0.777
rnfC_1
rnfC: electron transport complex, RnfABCDGE type, C subunit.
     
 0.774
pduT
Microcompartments protein.
  
  
 0.770
ackA-2
ackA: acetate kinase.
  
  
 0.769
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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