STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pduBmicrocomp_PduB: microcompartment protein PduB. (270 aa)    
Predicted Functional Partners:
pduC
Propanediol dehydratase large subunit.
 
  
 0.977
pduD
Propanediol dehydratase medium subunit.
 
  
 0.975
pduE
Propanediol dehydratase small subunit.
 
  
 0.958
ddrA
reactive_PduG: diol dehydratase reactivase alpha subunit.
 
  
 0.924
ddrB
Dehydratase medium subunit.
 
  
 0.923
pduO_1
ATP:cob(I)alamin adenosyltransferase; pduO_Nterm: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
 
  
 0.898
pduA-2
Propanediol utilization protein PduA.
 
  
 0.897
pduP_1
Aldehyde dehydrogenase family protein.
 
   
 0.825
pduN_1
Ethanolamine utilization EutN/carboxysome family protein.
 
  
 0.749
pduU
Propanediol utilization protein PduU.
 
   
 0.734
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.