STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pocRHelix-turn-helix domain protein. (300 aa)    
Predicted Functional Partners:
CH53_3986
Putative heat shock DnaJ domain protein.
  
     0.722
rhaS_1
Helix-turn-helix domain protein; Activates expression of the rhaBAD and rhaT operons.
  
     0.660
rhaR
HTH-type transcriptional activator rhaR; Activates expression of the rhaSR operon in response to L- rhamnose.
  
     0.635
pduX_1
GHMP kinase N terminal domain protein.
  
     0.581
pduX_2
GHMP kinase N terminal domain protein.
  
     0.547
pduB
microcomp_PduB: microcompartment protein PduB.
  
     0.546
ddrB
Dehydratase medium subunit.
  
     0.540
pduE
Propanediol dehydratase small subunit.
  
     0.519
pduD
Propanediol dehydratase medium subunit.
  
     0.491
rob_2
Helix-turn-helix domain protein.
  
     0.489
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.