STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3418PGAP1-like family protein. (545 aa)    
Predicted Functional Partners:
CH53_3417
vgr_GE: Rhs element Vgr family protein.
     0.935
CH53_3419
Hypothetical protein.
  
 
 0.905
rcsF
Putative protein rcsF; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.621
CH53_3416
Hypothetical protein.
       0.578
CH53_283
Bacteriophage Mu Gp45 family protein.
  
     0.565
CH53_3420
PAAR motif family protein.
 
     0.564
clpV-2
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
 
     0.501
CH53_3421
Hypothetical protein.
       0.492
CH53_3410
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
  
     0.476
CH53_285
DNA circularization family protein.
  
     0.452
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.