STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3425Hypothetical protein. (365 aa)    
Predicted Functional Partners:
CH53_3423
impA-related N-terminal family protein.
 
  
 0.973
CH53_3428
impA-related N-terminal family protein.
 
  
 0.967
CH53_3427
Lysozyme family protein; Gene 25-like.
 
  
 0.965
CH53_3424
Hypothetical protein.
 
  
 0.959
CH53_3426
Type VI secretion lipofamily protein.
 
  
 0.958
CH53_3422
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.935
CH53_2540
impA-related N-terminal family protein.
 
  
 0.920
CH53_3410
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
 0.849
CH53_3407
Hypothetical protein.
 
  
 0.829
CH53_3408
Hypothetical protein.
 
  
 0.828
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.