STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3440Bacterial extracellular solute-binding family protein. (343 aa)    
Predicted Functional Partners:
modB_2
Binding--dependent transport system inner membrane component family protein.
 
 
  0.976
fbpC
ABC transporter family protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.957
sfuB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.952
yfuA
yfuA.
  
  
0.917
sfuC
ABC transporter family protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
 
 0.894
thiP
thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein.
 
  
 0.739
uhpC_1
Major Facilitator Superfamily protein.
 
  
 0.732
efeU_1
Iron permease FTR1 family protein.
  
  
 0.598
CH53_3706
YHS domain protein.
 
    0.592
tpd
Fe2+ transport family protein.
  
  
 0.585
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.