STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uhpC_1Major Facilitator Superfamily protein. (441 aa)    
Predicted Functional Partners:
nreB_2
Histidine kinase family protein.
  
 
 0.933
uhpC_2
2A0104: phosphoglycerate transporter family protein.
  
  
 
0.903
CH53_3440
Bacterial extracellular solute-binding family protein.
 
  
 0.764
uhpA_1
Bacterial regulatory s, luxR family protein.
     
 0.589
nreB_1
Histidine kinase family protein.
 
    0.567
glpA
glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.478
glpQ
Glycerophosphoryl diester phosphodiesterase family protein.
  
  
 0.463
glpB
Glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
 
    0.435
yfuA
yfuA.
  
    0.430
modB_2
Binding--dependent transport system inner membrane component family protein.
 
     0.424
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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