STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_34564'-phosphopantetheinyl transferase superfamily protein; Belongs to the P-Pant transferase superfamily. (249 aa)    
Predicted Functional Partners:
acpS
Holo-[acyl-carrier-protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
     
 0.913
fabD
fabD: malonyl CoA-acyl carrier protein transacylase.
     
  0.900
fes
Hypothetical protein.
 
  
 0.641
menF
Menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate.
  
  
 0.598
CH53_4416
Glycine zipper 2TM domain protein.
  
     0.553
fepA
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
 0.508
fepB
Periplasmic binding family protein.
 
  
 0.472
CH53_1109
Adh_fam_1: zinc-binding alcohol dehydrogenase family protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
    
   0.415
b4051
Zinc-binding dehydrogenase family protein.
    
   0.415
yhdH
Putative quinone oxidoreductase YhdH.
    
   0.415
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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