STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zraSHis Kinase A domain protein. (479 aa)    
Predicted Functional Partners:
zraR
Transcriptional regulatory protein zraR.
 
 0.994
zraR_2
Bacterial regulatory, Fis family protein.
 
 
 0.741
blrA
Response regulator.
  
 
 
 0.667
cpxR
Transcriptional regulatory protein CpxR.
  
 
 
 0.628
amt
Amt: ammonium transporter family protein.
  
 
 0.593
glnK
Nitrogen regulatory protein P-II 2; Belongs to the P(II) protein family.
  
 
 0.587
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.587
gltB
Glutamine amidotransferases class-II family protein.
     
 0.574
hnr
Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation.
 
 
 
 0.572
qseF
AAA domain family protein.
 
 
 0.568
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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