STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_35193-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase family protein. (301 aa)    
Predicted Functional Partners:
rcsB_2
Bacterial regulatory s, luxR family protein.
  
     0.585
lrpC
asnC-type helix-turn-helix domain protein.
       0.551
sfaA_2
Fimbrial family protein.
  
     0.540
cdh
CDP-diacylglycerol pyrophosphatase family protein.
  
     0.533
mrfC_1
papC N-terminal domain protein.
  
     0.481
ycgR
Flagellar brake protein YcgR; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
     0.463
CH53_1429
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
  
     0.455
mrfC_2
papC N-terminal domain protein.
  
     0.453
yqiG_2
papC N-terminal domain protein.
  
     0.441
focC_3
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
  
     0.438
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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