STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZ_1Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family. (1039 aa)    
Predicted Functional Partners:
galM
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
 
 
 0.936
melA
Alpha-galactosidase.
 
  
 0.914
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
     
 0.904
xylA
xylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family.
    
 0.823
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.758
pfkB
1-phosphofructokinase; pfkB: 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.593
pfkB-2
6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
   
    0.593
lacI_1
Bacterial regulatory s, lacI family protein.
     
 0.549
nifJ
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.512
pehX
exo-poly-alpha-D-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.503
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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