STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mgtA-2ATPase-IIIB_Mg: magnesium-translocating P-type ATPase. (899 aa)    
Predicted Functional Partners:
mgtC
mgtC family protein.
 
 
 0.944
prcA
Proconvertase P-domain protein.
  
 
 0.689
dctA
Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
    
 
 0.577
phoQ
Virulence sensor histidine kinase phoQ.
   
  
 0.565
phoP
Transcriptional regulatory protein phoP.
      
 0.547
gltP_1
Dicarboxylate symporter family protein; Catalyzes the proton-dependent transport of glutamate and aspartate; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. GltP subfamily.
    
 
 0.543
mgtE-2
Magnesium transporter; Acts as a magnesium transporter.
      
 0.517
sapB_1
mgtC family protein.
 
 
 0.507
ytxA
Pertussis toxin, subunit 1 family protein.
   
    0.469
CH53_3113
Cytotoxic family protein.
   
  
 0.441
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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