Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
efeBDyp-type peroxidase family protein; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (434 aa)    
Predicted Functional Partners:
efeO
Imelysin family protein.
 
  
 0.995
efeU_2
Iron permease FTR1 family protein.
 
  
 0.980
yobA
copC domain protein.
 
  
 0.693
efeU_1
Iron permease FTR1 family protein.
 
  
 0.689
feoC
Ferrous iron transport protein C; May function as a transcriptional regulator that controls feoABC expression.
      
 0.540
feoA
Ferrous iron transport protein A.
      
 0.535
hemY
hemY family protein.
     
  0.500
putP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.465
yfeX
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
   
 0.418
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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