STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3635Bacterial regulatory s, gntR family protein. (335 aa)    
Predicted Functional Partners:
dam_3
MT-A70 family protein; Belongs to the MT-A70-like family.
       0.781
CH53_3632
Hypothetical protein.
       0.780
CH53_3634
Hypothetical protein.
       0.780
CH53_3633
Hypothetical protein.
       0.773
CH53_87
Acyltransferase family protein.
  
     0.591
CH53_3631
Hypothetical protein.
       0.564
CH53_4010
terB-N family protein.
  
     0.559
CH53_3297
LVIVD repeat family protein.
  
     0.552
mzrA
Hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.546
esaI
Acyl-homoserine-lactone synthase.
  
     0.521
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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