STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3658phage_P2_V: phage baseplate assembly V family protein. (65 aa)    
Predicted Functional Partners:
CH53_3664
tail_comp_S: phage virion morphogenesis protein.
  
  
 0.590
CH53_3644
Phage terminase large subunit family protein.
  
  
 0.574
CH53_4317
Caudovirales tail fiber assembly family protein.
  
  
 0.563
CH53_281
Baseplate J-like family protein.
   
   0.560
CH53_278
Hypothetical protein.
  
  
 0.522
CH53_707
D-alanyl-D-alanine carboxypeptidase family protein.
  
    0.453
CH53_604
Hypothetical protein.
   
   0.419
CH53_1841
ogr/Delta-like zinc finger family protein.
   
    0.413
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.