STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cimH2-hydroxycarboxylate transporter family protein. (452 aa)    
Predicted Functional Partners:
citX
citrate_citX: holo-ACP synthase CitX.
 
   
 0.609
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.601
citF
citF: citrate lyase, alpha subunit.
 
   
 0.587
citC
[citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
   
 0.568
citE
citE: citrate (pro-3S)-lyase, beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.555
maeB
Malic enzyme, NAD binding domain protein.
 
  
 0.549
dpiB
Sensor histidine kinase DpiB.
 
  
 0.530
CH53_2004
cupin_WbuC: cupin fold metallo, WbuC family protein.
  
     0.518
citG
citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG.
 
     0.517
maeA
Malic enzyme, NAD binding domain protein.
  
  
 0.511
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.