STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH53_3694Hypothetical protein. (420 aa)    
Predicted Functional Partners:
fucA_2
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
  
 0.986
CH53_3693
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 
  
 0.951
ygbM
Xylose isomerase-like TIM barrel family protein; Belongs to the hyi family.
 
  
 0.942
CH53_2239
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
    0.745
hyi
OH-pyruv-isom: hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.689
fucA
L-fuculose phosphate aldolase; Involved in the degradation of L-fucose and D-arabinose. Catalyzes the reversible cleavage of L-fuculose 1-phosphate (Fuc1P) to yield dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.572
glpR_2
deoR-like helix-turn-helix domain protein.
 
     0.494
garR_2
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
 
  
 0.407
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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