STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmuD_1Glycosyl hydrolase 1 family protein; Belongs to the glycosyl hydrolase 1 family. (466 aa)    
Predicted Functional Partners:
chbA
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component.
 
 
 0.954
gmuC
PTS system, lactose/cellobiose IIC component family protein; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 0.939
gmuB_1
PTS system, Lactose/Cellobiose specific IIB subunit.
 
 
 0.935
yicI
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family.
  
 0.917
ascF
EIIB_glc: PTS system, glucose-like IIB component domain protein.
  
 
 0.916
crr
Glucose-specific phosphotransferase enzyme IIA component.
  
 
 0.907
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.906
malZ
Hypothetical protein; Alpha amylase, N-terminal ig-like domain protein.
  
 
 0.904
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
  0.903
pgm
Pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific.
     
  0.900
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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