STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaAPGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. (822 aa)    
Predicted Functional Partners:
pgaC
pgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase.
 
 
 0.965
pgaB
deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.
 
   
 0.916
CH53_2401
Hypothetical protein.
   
 0.796
CH53_691
Ankyrin repeat family protein.
  
 0.783
alaS_2
Threonyl and Alanyl tRNA synthetase second additional domain protein.
 
 
 0.781
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.743
htpG
Hsp90 family protein; Molecular chaperone. Has ATPase activity.
   
 0.734
CH53_4324
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
   
 0.734
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.726
nuoM
NADH-quinone oxidoreductase subunit M.
   
 
 0.669
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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