Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgaAPGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. (822 aa)    
Predicted Functional Partners:
pgaC
pgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase.
 
 
 0.953
pgaB
deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB.
 
   
 0.916
CH53_247
Putative enterotoxin.
  
     0.656
pgaD
PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD.
       0.652
CH53_3012
AAA domain family protein.
  
     0.648
fkpA_2
Domain amino terminal to FKBP-type peptidyl-prolyl isomerase family protein.
  
 0.628
CH53_2401
Hypothetical protein.
    
 0.613
CH53_691
Ankyrin repeat family protein.
   
 0.606
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.565
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.564
Your Current Organism:
Yersinia intermedia
NCBI taxonomy Id: 631
Other names: ATCC 29909, CCUG 11292, CIP 80.28, DSM 18517, JCM 7579, NCTC 11469, Y. intermedia, strain 3953, strain Bottone 48, strain Chester 48
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